First things first: the cash you receive from a refinance is not taxable income. You borrowed money. You didn’t earn it. But even though nothing hits your income statement as revenue, there are real bookkeeping entries that need to happen. Skipping them or recording them wrong will throw off your balance sheet and your tax deductions for years.

Here’s the workflow, roughly in the order things happen.

Close out the old loan. On the day the refinance closes, the old mortgage gets paid off from the new loan proceeds. In your books, debit the old mortgage liability to zero it out. The payoff amount on your settlement statement tells you exactly what this number is. If the old loan had an escrow balance, you’ll typically get a refund check from the prior servicer a few weeks later. Record that when it arrives.

Record the new loan. Create a new long-term liability for the full amount of the new mortgage. If you did a cash-out refinance, the difference between the new loan amount and the old payoff (minus closing costs) lands in your bank account. That deposit is not income. It’s loan proceeds. Record it as a transfer from the new loan liability to your bank account.

Capitalize closing costs and amortize them. Loan origination fees, title fees, recording fees, and other closing costs related to obtaining the new loan get capitalized as an asset (often called “loan costs” or “deferred financing costs”) and amortized over the life of the new loan. You don’t expense these in the year you refinance. You spread them out. If you took a 30-year mortgage, you amortize over 30 years. Set up a monthly or annual amortization entry so a portion flows to your expense each period.

Handle points correctly. This is where rental property bookkeeping differs from your primary residence. Points paid on a refinance of a rental property cannot be deducted in full the year you pay them. They must be amortized over the loan term, just like the other closing costs. Lump them in with your deferred financing costs and spread them evenly.

Write off remaining costs from the old loan. Here’s the part many landlords miss. If you were amortizing points or closing costs from the original mortgage (or a prior refinance), and that loan just got paid off, you can deduct the entire remaining unamortized balance in the year the old loan closes. Pull up your amortization schedule for the old loan costs, find the remaining balance, and expense it. This is a legitimate deduction that gets overlooked constantly.

Expense prepaid items. Your settlement statement will show prepaid interest, prepaid insurance, or prepaid property taxes. Prepaid interest for the period between closing and your first payment is deductible as mortgage interest in the year paid. Prepaid insurance and taxes go to their respective expense accounts or get set up as prepaid assets and expensed as the coverage period passes.

Update your depreciation records if needed. The refinance itself doesn’t change your property’s depreciable basis. You’re not buying a new asset. But if you used cash-out proceeds to fund improvements on the property, those improvements need to be capitalized and depreciated separately.

The settlement statement is your source document for all of this. Every number you need is on that form. Go through it line by line, and make sure each item ends up in the right place in your books.

If you own multiple rental properties and refinance regularly, this workflow repeats each time and the loan cost amortization schedules start stacking up. Keeping them organized matters because your tax preparer needs clean numbers for Schedule E, and a missed deduction on unamortized loan costs from a paid-off mortgage is money left on the table. Our Northern Virginia small business bookkeeping team works with landlords and real estate investors on exactly this kind of transaction, making sure the books reflect what actually happened and every allowable deduction gets captured.